PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000224592
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 456aa    MW: 51356.8 Da    PI: 4.5413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000224592genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.89e-32581961128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWka 85 
                    lp+G++F+Ptd+e++++ ++k+  g++     ++++   +++  +i+ ++P++Lp +vk + +  +fF+++ k+y+tg+rk+r+++    + +W++
  MDP0000224592  58 LPKGVKFDPTDQEIIWHLIAKSGVGDRkphpfIDEFILxVDDDeGICCSHPRKLP-SVKLDGSASHFFHRAIKAYNTGTRKRRKIHdgdgDVRWHK 152
                    799************888877755555576553333333443336**********.667788999******************9883433446*** PP

            NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    tg++k+v+  +g + g+kk++v+y  + r  k++kt+Wvmh+y+l
  MDP0000224592 153 TGRTKPVIL-DGVQRGCKKIMVLYmsTXRGGKPVKTNWVMHQYHL 196
                    *********.99************5545778888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-3943215IPR003441NAC domain
PROSITE profilePS5100530.36358215IPR003441NAC domain
PfamPF023652.4E-1359196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAGPSWLVDK NRIATKIKSA SGGYDPNVII WQSNPTKACP KCQHTIDNSD VAQEWPGLPK  60
GVKFDPTDQE IIWHLIAKSG VGDRKPHPFI DEFILXVDDD EGICCSHPRK LPSVKLDGSA  120
SHFFHRAIKA YNTGTRKRRK IHDGDGDVRW HKTGRTKPVI LDGVQRGCKK IMVLYMSTXR  180
GGKPVKTNWV MHQYHLGVEE DEKDGEYVIS KIYYQQQEAK EADKTDQDVP ESIDAVITKV  240
DPVTPKSVTP EPPRAERKLG DFDXXLDTPA PSRDPFLQYR VEDGAEDEDE VNFEVDRALD  300
EIHPEVDCAE DDVXPESEKP DDYDQHKVEN QADEVINNTE NIAQEDPKWW DSESQNLLDS  360
QQLVEGLSLC DDLLQSQSPT RGGHENGEQA HIKPPRLADY AKLGPEDLKK DLEACQNLVL  420
DPANILELDT PPDFRLSQLE FGSQESFLSW GGKVAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-145819615140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361739.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-180NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM5XB160.0M5XB16_PRUPE; Uncharacterized protein
STRINGVIT_01s0011g02990.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56623354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-172NAC family protein